| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Atulayan Bay | Sea/Bay/Gulf | native | 41469 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| Davao Gulf | Sea/Bay/Gulf | native | 45419 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 1419 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Leyte Gulf | Sea/Bay/Gulf | native | 68980 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 87989 |
| Pacific Ocean | Sea/Bay/Gulf | native | 1419 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 1419 |
| Verde Island Passage | Sea/Bay/Gulf | native | 6956 |