| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Chobe | River (basin) | native | 37065 |
| Congo | River (basin) | native | 27609 |
| Ethiopian | Zoogeographic realm | endemic | 3203 |
| Kasai | River (basin) | native | 120641 |
| Kunene | River (basin) | native | 7248 |
| Linyanti Swamp | Lake | native | 37065 |
| Malawi | Lake | native | 7248 |
| Mweru | Lake | native | 94890 |
| Okavango | River (basin) | native | 3203 |
| Upper Zambezi | River (basin) | native | 11970 |
| Zambezi | River (basin) | native | 3203 |