| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Bangweulu | River (basin) | questionable | 91772 |
| Chobe | River (basin) | misidentification | 91771 |
| Congo | River (basin) | questionable | 91772 |
| Ethiopian | Zoogeographic realm | endemic | 7248 |
| Kunene | River (basin) | misidentification | 91771 |
| Kwando | River (basin) | misidentification | 91771 |
| Liambezi | Lake | misidentification | 91771 |
| Limpopo | River (basin) | native | 13332 |
| Malagarazi | River (basin) | native | 98755 |
| Malawi | Lake | native | 91771 |
| Mweru | Lake | questionable | 91772 |
| Okavango | River (basin) | questionable | 79613 |
| Rufiji | River (basin) | misidentification | 96601 |
| Rukwa | Lake | native | 27292 |
| Ruvuma | River (basin) | native | 91771 |
| Tana | River (basin) | native | 13332 |
| Victoria | Lake | native | 34290 |
| Victoria Nile | River (basin) | native | 4903 |
| Wami | River (basin) | native | 91772 |
| Zambezi | River (basin) | native | 3203 |