| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Buzi | River (basin) | native | 7248 |
| Congo | River (basin) | questionable | 246 |
| Ethiopian | Zoogeographic realm | endemic | 3202 |
| Kariba | Lake | native | 3202 |
| Kunene | River (basin) | native | 7248 |
| Limpopo | River (basin) | questionable | 3202 |
| Malawi | Lake | native | 7248 |
| Mweru | Lake | questionable | 27609 |
| Okavango | River (basin) | questionable | 3202 |
| Pungwe | River (basin) | native | 7248 |
| Shire | River (basin) | native | 37112 |
| Sulunga | Lake | native | 2988 |
| Wami | River (basin) | native | 41366 |
| Zambezi | River (basin) | native | 7248 |