| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Arabian Sea | Sea/Bay/Gulf | native | 6019 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 4919 |
| Carigara Bay | Sea/Bay/Gulf | native | 46323 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Indian Ocean | Sea/Bay/Gulf | native | 4919 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5978 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| North Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 5978 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5978 |
| Pagbilao Bay | Sea/Bay/Gulf | native | 11338 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 6019 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45161 |
| Shark Bay | Sea/Bay/Gulf | native | 115274 |
| Sikao Creek | River (basin) | native | 52823 |
| Sogod Bay | Sea/Bay/Gulf | native | 46392 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 2858 |
| Tayabas Bay | Sea/Bay/Gulf | native | 47573 |
| Visayan Sea | Sea/Bay/Gulf | native | 110387 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115274 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |