| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Coral Sea and GBR | Sea/Bay/Gulf | native | 48497 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Indian Ocean | Sea/Bay/Gulf | native | 42740 |
| Manning-Hawkesbury | Sea/Bay/Gulf | native | 75154 |
| North Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 3132 |
| Pacific Ocean | Sea/Bay/Gulf | native | 3132 |
| Red Sea | Sea/Bay/Gulf | error | 84159 |
| Shark Bay | Sea/Bay/Gulf | native | 115321 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | questionable | 45419 |
| West Central Australian Shelf | Sea/Bay/Gulf | native | 115321 |