| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5222 |
| Arabian Sea | Sea/Bay/Gulf | native | 4787 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 4787 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 5222 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Indian Ocean | Sea/Bay/Gulf | native | 5222 |
| Indonesian Sea | Sea/Bay/Gulf | native | 5222 |
| Kimbe Bay | Sea/Bay/Gulf | native | 28888 |
| Kingman Reef | Sea/Bay/Gulf | native | 72402 |
| Kuroshio Current | Sea/Bay/Gulf | native | 559 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Milne Bay | Sea/Bay/Gulf | native | 41468 |
| North Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 4787 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 4787 |
| Polynesian Waters | Sea/Bay/Gulf | native | 5222 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 5222 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |
| Spratly Islands | Sea/Bay/Gulf | native | 48445 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 42484 |
| Tahiti I. | Sea/Bay/Gulf | native | 89972 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 57038 |
| Yellow Sea | Sea/Bay/Gulf | native | 12711 |