| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Davao Gulf | Sea/Bay/Gulf | questionable | 43437 |
| Gulf of Aqaba | Sea/Bay/Gulf | native | 58021 |
| Indian Ocean | Sea/Bay/Gulf | native | 48497 |
| Lagonoy Gulf | Sea/Bay/Gulf | questionable | 43283 |
| Lingayen Gulf | Sea/Bay/Gulf | questionable | 5399 |
| Lutao Island | Sea/Bay/Gulf | questionable | 11104 |
| Ragay Gulf | Sea/Bay/Gulf | questionable | 47919 |
| Red Sea | Sea/Bay/Gulf | endemic | 84159 |
| San Miguel Bay | Sea/Bay/Gulf | questionable | 45334 |
| Sorsogon Bay | Sea/Bay/Gulf | questionable | 47531 |
| South China Sea | Sea/Bay/Gulf | questionable | 393 |
| Tubbataha Reefs | Sea/Bay/Gulf | questionable | 53416 |
| Verde Island Passage | Sea/Bay/Gulf | questionable | 37603 |