| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Davao Gulf | Sea/Bay/Gulf | native | 45419 |
| Indonesian Sea | Sea/Bay/Gulf | native | 8631 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 5399 |
| Lutao Island | Sea/Bay/Gulf | native | 11104 |
| Pacific Ocean | Sea/Bay/Gulf | native | 5193 |
| Panay Gulf | Sea/Bay/Gulf | native | 42831 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| San Miguel Bay | Sea/Bay/Gulf | native | 45334 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern Palawan | Sea/Bay/Gulf | native | 58652 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 45419 |
| Tawi tawi Bay | Sea/Bay/Gulf | native | 59110 |
| Verde Island Passage | Sea/Bay/Gulf | native | 107852 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |