| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | native | 106290 |
| Congo | River (basin) | endemic | 42505 |
| Ethiopian | Zoogeographic realm | endemic | 3203 |
| Kasai | River (basin) | native | 46243 |
| Lindi-Tshopo | River (basin) | native | 106290 |
| Lualaba | River (basin) | native | 106245 |
| Middle Congo | River (basin) | native | 42505 |
| Mweru | Lake | questionable | 52959 |
| Ubangui | River (basin) | native | 45441 |
| Uélé | River (basin) | native | 42505 |
| Wagenia Falls | River (basin) | native | 106245 |