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| No. | Valid Name | Author | English Name |
| 1. | Knipowitschia byblisia | Ahnelt, 2011 | Byblis Goby |
| 2. | Knipowitschia cameliae | Nalbant & Oţel, 1995 | Danube delta dwarf goby |
| 3. | Knipowitschia caucasica | (Berg, 1916) | Caucasian dwarf goby |
| 4. | Knipowitschia caunosi | Ahnelt, 2011 | Caunos Goby |
| 5. | Knipowitschia croatica | Mrakovcic, Kerovec, Misetic & Schneider, 1996 | Neretva dwarf goby |
| 6. | Knipowitschia ephesi | Ahnelt, 1995 | Ephesus goby |
| 7. | Knipowitschia goerneri | Ahnelt, 1991 | Corfu dwarf goby |
| 8. | Knipowitschia iljini | Berg, 1931 | |
| 9. | Knipowitschia longecaudata | (Kessler, 1877) | Longtail dwarf goby |
| 10. | Knipowitschia mermere | Ahnelt, 1995 | Marmara goby |
| 11. | Knipowitschia milleri | (Ahnelt & Bianco, 1990) | Acheron spring goby |
| 12. | Knipowitschia montenegrina | Kovačić & Šanda, 2007 | |
| 13. | Knipowitschia mrakovcici | Miller, 2009 | |
| 14. | Knipowitschia panizzae | (Verga, 1841) | Adriatic dwarf goby |
| 15. | Knipowitschia punctatissima | (Canestrini, 1864) | Italian spring goby |
| 16. | Knipowitschia radovici | Kovačić, 2005 | Norin goby |
| 17. | Knipowitschia thessala | (Vinciguerra, 1921) | Thessaly goby |