| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5285 |
| Andaman Sea | Sea/Bay/Gulf | native | 9962 |
| Arabian Sea | Sea/Bay/Gulf | native | 9962 |
| Atlantic Ocean | Sea/Bay/Gulf | native | 2334 |
| Bay of Bengal | Sea/Bay/Gulf | native | 9962 |
| Calamianes Islands | Sea/Bay/Gulf | native | 48613 |
| Central and Southern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 2334 |
| East Central Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 48497 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 9962 |
| Indian Ocean | Sea/Bay/Gulf | native | 2334 |
| Indonesian Sea | Sea/Bay/Gulf | native | 9962 |
| North Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 2334 |
| Pacific Ocean | Sea/Bay/Gulf | native | 592 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Somali Coastal Current | Sea/Bay/Gulf | native | 9962 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |
| Torres Strait Northern Great Barrier Reef | Sea/Bay/Gulf | native | 75154 |
| Yellow Sea | Sea/Bay/Gulf | native | 5193 |