| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Agulhas Current | Sea/Bay/Gulf | native | 5213 |
| Arabian Sea | Sea/Bay/Gulf | native | 2872 |
| Australian | Zoogeographic realm | native | 8879 |
| Bay of Bengal | Sea/Bay/Gulf | native | 5736 |
| Chilika Lake/Lagoon | Lagoon | native | 29108 |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 9812 |
| East China Sea | Sea/Bay/Gulf | native | 47843 |
| Ethiopian | Zoogeographic realm | native | 4967 |
| Gulf of Aden | Sea/Bay/Gulf | native | 5450 |
| Indian Ocean | Sea/Bay/Gulf | native | 1602 |
| Indonesian Sea | Sea/Bay/Gulf | native | 7050 |
| Insular Pacific-Hawaiian | Sea/Bay/Gulf | native | 9812 |
| Kuroshio Current | Sea/Bay/Gulf | native | 1602 |
| Leyte Gulf | Sea/Bay/Gulf | native | 31411 |
| Milne Bay | Sea/Bay/Gulf | native | 41464 |
| North Australian Shelf | Sea/Bay/Gulf | native | 9812 |
| Northeast Australian Shelf | Sea/Bay/Gulf | native | 9812 |
| Northwest Australian Shelf | Sea/Bay/Gulf | native | 9812 |
| Oriental | Zoogeographic realm | native | 87596 |
| Pacific Ocean | Sea/Bay/Gulf | native | 9812 |
| Palearctic | Zoogeographic realm | native | 1602 |
| Peng-hu Island | Sea/Bay/Gulf | native | 55073 |
| Persian Gulf | Sea/Bay/Gulf | native | 1602 |
| Polynesian Waters | Sea/Bay/Gulf | native | 9812 |
| Red Sea | Sea/Bay/Gulf | native | 84159 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Sikao Creek | River (basin) | native | 52823 |
| Sorsogon Bay | Sea/Bay/Gulf | native | 47531 |
| South China Sea | Sea/Bay/Gulf | native | 36648 |
| Southern China | Sea/Bay/Gulf | native | 94637 |