| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Aruwimi | River (basin) | misidentification | 82705 |
| Congo | River (basin) | native | 82705 |
| Edward | Lake | native | 107916 |
| Ethiopian | Zoogeographic realm | endemic | 2801 |
| Kivu | Lake | native | 107916 |
| Lualaba | River (basin) | native | 12818 |
| Malagarazi | River (basin) | native | 107916 |
| Rukwa | Lake | native | 27292 |
| Rusizi | River (basin) | native | 107916 |
| Tanganyika | Lake | native | 107916 |