| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Calauag Bay | Sea/Bay/Gulf | native | 47571 |
| Davao Gulf | Sea/Bay/Gulf | native | 43437 |
| Lagonoy Gulf | Sea/Bay/Gulf | native | 43283 |
| Lanuza Bay | Sea/Bay/Gulf | native | 104756 |
| Lingayen Gulf | Sea/Bay/Gulf | native | 43020 |
| Ormoc Bay | Sea/Bay/Gulf | native | 45205 |
| Panguil Bay | Sea/Bay/Gulf | native | 47626 |
| Ragay Gulf | Sea/Bay/Gulf | native | 38601 |
| Samar Sea | Sea/Bay/Gulf | native | 29039 |
| San Miguel Bay | Sea/Bay/Gulf | native | 43275 |
| San Pedro Bay | Sea/Bay/Gulf | native | 46241 |
| Southern Palawan | Sea/Bay/Gulf | native | 114805 |