| Species | Name Used in Reference |
|---|---|
| Astroblepus cacharas Ardila Rodríguez, 2011 | Astroblepus cacharas (p. ) |
| Coregonus holsatus Thienemann, 1916 | Coregonus holsata (p. ) |
| Melanotaenia mairasi Allen & Hadiaty, 2011 | Melanotaenia mairasi (p. ) |
| Ompok miostoma (Vaillant, 1902) | Ompok miostoma (p. ) |
| Pholidochromis marginatus (Lubbock, 1980) | Pseudochromis marginatus (p. ) |
| Trichomycterus ballesterosi Ardila Rodríguez, 2011 | Trichomycterus ballesterosi (p. ) |
| Trichomycterus maldonadoi Ardila Rodríguez, 2011 | Trichomycterus maldonadoi (p. ) |
| Trichomycterus oroyae (Eigenmann & Eigenmann, 1889) | Trichomycterus oroyae (p. ) |
| Trichomycterus ruitoquensis Ardila Rodríguez, 2007 | Trichomycterus ruitoquensis (p. ) |